Complete genome sequence of bat coronavirus HKU2 from Chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome
Identifieur interne : 003747 ( Main/Exploration ); précédent : 003746; suivant : 003748Complete genome sequence of bat coronavirus HKU2 from Chinese horseshoe bats revealed a much smaller spike gene with a different evolutionary lineage from the rest of the genome
Auteurs : Susanna K. P. Lau [Hong Kong] ; Patrick C. Y. Woo [Hong Kong] ; Kenneth S. M. Li [Hong Kong] ; Yi Huang [Hong Kong] ; Ming Wang [République populaire de Chine] ; Carol S. F. Lam [Hong Kong] ; Huifang Xu [République populaire de Chine] ; Rongtong Guo [République populaire de Chine] ; Kwok-Hung Chan [Hong Kong] ; Bo-Jian Zheng [Hong Kong] ; Kwok-Yung Yuen [Hong Kong]Source :
- Virology [ 0042-6822 ] ; 2007.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN, Animaux, Chiroptera (virologie), Coronaviridae (), Coronaviridae (génétique), Coronaviridae (isolement et purification), Données de séquences moléculaires, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires (), Glycoprotéines membranaires (génétique), Génome viral, Hong Kong, Protéines de l'enveloppe virale (), Protéines de l'enveloppe virale (génétique), Évolution moléculaire.
- MESH :
- génétique : Coronaviridae, Glycoprotéines membranaires, Protéines de l'enveloppe virale.
- isolement et purification : Coronaviridae.
- virologie : Chiroptera.
- Analyse de séquence d'ADN, Animaux, Coronaviridae, Données de séquences moléculaires, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires, Génome viral, Hong Kong, Protéines de l'enveloppe virale, Évolution moléculaire.
- Wicri :
- geographic : Hong Kong.
English descriptors
- KwdEn :
- Animals, Chiroptera (virology), Coronaviridae (classification), Coronaviridae (genetics), Coronaviridae (isolation & purification), Evolution, Molecular, Genome, Viral, Hong Kong, Membrane Glycoproteins (chemistry), Membrane Glycoproteins (genetics), Molecular Sequence Data, Sequence Analysis, DNA, Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (chemistry), Viral Envelope Proteins (genetics).
- MESH :
- chemical , chemistry : Membrane Glycoproteins, Viral Envelope Proteins.
- chemical , genetics : Membrane Glycoproteins, Viral Envelope Proteins.
- geographic : Hong Kong, Spike Glycoprotein, Coronavirus.
- classification : Coronaviridae.
- genetics : Coronaviridae.
- isolation & purification : Coronaviridae.
- virology : Chiroptera.
- Animals, Evolution, Molecular, Genome, Viral, Molecular Sequence Data, Sequence Analysis, DNA.
Abstract
Apart from bat-SARS-CoV, we have identified a novel group 1 coronavirus, bat-CoV HKU2, in
Url:
DOI: 10.1016/j.virol.2007.06.009
PubMed: 17617433
PubMed Central: 7103351
Affiliations:
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Le document en format XML
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P." last="Lau">Susanna K. P. Lau</name><affiliation wicri:level="1"><nlm:aff id="aff1">State Key Laboratory of Emerging Infectious Diseases, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>State Key Laboratory of Emerging Infectious Diseases</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2">Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Research Centre of Infection and Immunology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Woo, Patrick C Y" sort="Woo, Patrick C Y" uniqKey="Woo P" first="Patrick C. Y." last="Woo">Patrick C. Y. Woo</name><affiliation wicri:level="1"><nlm:aff id="aff1">State Key Laboratory of Emerging Infectious Diseases, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>State Key Laboratory of Emerging Infectious Diseases</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2">Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Research Centre of Infection and Immunology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Li, Kenneth S M" sort="Li, Kenneth S M" uniqKey="Li K" first="Kenneth S. M." last="Li">Kenneth S. M. Li</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Huang, Yi" sort="Huang, Yi" uniqKey="Huang Y" first="Yi" last="Huang">Yi Huang</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name><affiliation wicri:level="3"><nlm:aff id="aff4">Guangzhou Center for Disease Control and Prevention, Guangzhou, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangzhou Center for Disease Control and Prevention, Guangzhou</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Lam, Carol S F" sort="Lam, Carol S F" uniqKey="Lam C" first="Carol S. F." last="Lam">Carol S. F. Lam</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Xu, Huifang" sort="Xu, Huifang" uniqKey="Xu H" first="Huifang" last="Xu">Huifang Xu</name><affiliation wicri:level="3"><nlm:aff id="aff4">Guangzhou Center for Disease Control and Prevention, Guangzhou, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangzhou Center for Disease Control and Prevention, Guangzhou</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Guo, Rongtong" sort="Guo, Rongtong" uniqKey="Guo R" first="Rongtong" last="Guo">Rongtong Guo</name><affiliation wicri:level="3"><nlm:aff id="aff4">Guangzhou Center for Disease Control and Prevention, Guangzhou, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guangzhou Center for Disease Control and Prevention, Guangzhou</wicri:regionArea><placeName><settlement type="city">Jiangmen</settlement><region type="province">Guangdong</region></placeName></affiliation></author><author><name sortKey="Chan, Kwok Hung" sort="Chan, Kwok Hung" uniqKey="Chan K" first="Kwok-Hung" last="Chan">Kwok-Hung Chan</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Zheng, Bo Jian" sort="Zheng, Bo Jian" uniqKey="Zheng B" first="Bo-Jian" last="Zheng">Bo-Jian Zheng</name><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author><author><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><affiliation wicri:level="1"><nlm:aff id="aff1">State Key Laboratory of Emerging Infectious Diseases, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>State Key Laboratory of Emerging Infectious Diseases</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2">Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Research Centre of Infection and Immunology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff3">Department of Microbiology, The University of Hong Kong, Hong Kong</nlm:aff><country xml:lang="fr">Hong Kong</country><wicri:regionArea>Department of Microbiology, The University of Hong Kong</wicri:regionArea><wicri:noRegion>The University of Hong Kong</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virology</title><idno type="ISSN">0042-6822</idno><idno type="eISSN">1096-0341</idno><imprint><date when="2007">2007</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Coronaviridae (classification)</term><term>Coronaviridae (genetics)</term><term>Coronaviridae (isolation & purification)</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Hong Kong</term><term>Membrane Glycoproteins (chemistry)</term><term>Membrane Glycoproteins (genetics)</term><term>Molecular Sequence Data</term><term>Sequence Analysis, DNA</term><term>Spike Glycoprotein, Coronavirus</term><term>Viral Envelope Proteins (chemistry)</term><term>Viral Envelope Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chiroptera (virologie)</term><term>Coronaviridae ()</term><term>Coronaviridae (génétique)</term><term>Coronaviridae (isolement et purification)</term><term>Données de séquences moléculaires</term><term>Glycoprotéine de spicule des coronavirus</term><term>Glycoprotéines membranaires ()</term><term>Glycoprotéines membranaires (génétique)</term><term>Génome viral</term><term>Hong Kong</term><term>Protéines de l'enveloppe virale ()</term><term>Protéines de l'enveloppe virale (génétique)</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Hong Kong</term><term>Spike Glycoprotein, Coronavirus</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronaviridae</term><term>Glycoprotéines membranaires</term><term>Protéines de l'enveloppe virale</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Evolution, Molecular</term><term>Genome, Viral</term><term>Molecular Sequence Data</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Coronaviridae</term><term>Données de séquences moléculaires</term><term>Glycoprotéine de spicule des coronavirus</term><term>Glycoprotéines membranaires</term><term>Génome viral</term><term>Hong Kong</term><term>Protéines de l'enveloppe virale</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Hong Kong</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Apart from bat-SARS-CoV, we have identified a novel group 1 coronavirus, bat-CoV HKU2, in <italic>Rhinolophus sinicus</italic> (Chinese horseshoe bats). Since it has been suggested that the receptor-binding motif (RBM) of SARS-CoV may have been acquired from a group 1 coronavirus, we conducted a surveillance study and identified bat-SARS-CoV and bat-CoV HKU2 in 8.7% and 7.5% respectively of <italic>R. sinicus</italic> in Hong Kong and Guangdong. Complete genome sequencing of four strains of bat-CoV HKU2 revealed the smallest coronavirus genome (27164 nucleotides) and a unique spike protein evolutionarily distinct from the rest of the genome. This spike protein, sharing similar deletions with other group 2 coronaviruses in its C-terminus, also contained a 15-amino acid peptide homologous to a corresponding peptide within the RBM of spike protein of SARS-CoV, which was absent in other coronaviruses except bat-SARS-CoV. These suggest a common evolutionary origin in the spike protein of bat-CoV HKU2, bat-SARS-CoV, and SARS-CoV.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Apweiler, R" uniqKey="Apweiler R">R. Apweiler</name></author><author><name sortKey="Attwood, T K" uniqKey="Attwood T">T.K. Attwood</name></author><author><name sortKey="Bairoch, A" uniqKey="Bairoch A">A. Bairoch</name></author><author><name sortKey="Bateman, A" uniqKey="Bateman A">A. Bateman</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E. Birney</name></author><author><name sortKey="Biswas, M" uniqKey="Biswas M">M. Biswas</name></author><author><name sortKey="Bucher, P" uniqKey="Bucher P">P. Bucher</name></author><author><name sortKey="Cerutti, L" uniqKey="Cerutti L">L. Cerutti</name></author><author><name sortKey="Corpet, F" uniqKey="Corpet F">F. 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Lau</name></noRegion><name sortKey="Chan, Kwok Hung" sort="Chan, Kwok Hung" uniqKey="Chan K" first="Kwok-Hung" last="Chan">Kwok-Hung Chan</name><name sortKey="Huang, Yi" sort="Huang, Yi" uniqKey="Huang Y" first="Yi" last="Huang">Yi Huang</name><name sortKey="Lam, Carol S F" sort="Lam, Carol S F" uniqKey="Lam C" first="Carol S. F." last="Lam">Carol S. F. Lam</name><name sortKey="Lau, Susanna K P" sort="Lau, Susanna K P" uniqKey="Lau S" first="Susanna K. P." last="Lau">Susanna K. P. Lau</name><name sortKey="Lau, Susanna K P" sort="Lau, Susanna K P" uniqKey="Lau S" first="Susanna K. P." last="Lau">Susanna K. P. Lau</name><name sortKey="Li, Kenneth S M" sort="Li, Kenneth S M" uniqKey="Li K" first="Kenneth S. M." last="Li">Kenneth S. M. Li</name><name sortKey="Woo, Patrick C Y" sort="Woo, Patrick C Y" uniqKey="Woo P" first="Patrick C. Y." last="Woo">Patrick C. Y. Woo</name><name sortKey="Woo, Patrick C Y" sort="Woo, Patrick C Y" uniqKey="Woo P" first="Patrick C. Y." last="Woo">Patrick C. Y. Woo</name><name sortKey="Woo, Patrick C Y" sort="Woo, Patrick C Y" uniqKey="Woo P" first="Patrick C. Y." last="Woo">Patrick C. Y. Woo</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name><name sortKey="Zheng, Bo Jian" sort="Zheng, Bo Jian" uniqKey="Zheng B" first="Bo-Jian" last="Zheng">Bo-Jian Zheng</name></country><country name="République populaire de Chine"><region name="Guangdong"><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name></region><name sortKey="Guo, Rongtong" sort="Guo, Rongtong" uniqKey="Guo R" first="Rongtong" last="Guo">Rongtong Guo</name><name sortKey="Xu, Huifang" sort="Xu, Huifang" uniqKey="Xu H" first="Huifang" last="Xu">Huifang Xu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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